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Bioinformatics is the study of how information is represented and transmitted in biological systems using computer technology. It involves the use of huge databases, high-speed, secure networks, database search engines, data mining tools, data visualization software, and modeling and simulation software. One of the most prominent uses of bioinformatics is in the visualization of protein structures, as illustrated in Figure A.7.

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Consider an electromagnetic wave with fields Ei(x, y, z) and Hi(x, y, z) impinging on a 2-D rough surface with a random height profile z = f(x, y). Above the rough surface is a free space (region 1) while the subsurface is characterized by permittivity 1'2 and permeability IL2 (region 2). The height function z = f(x, y) is a random process with zero mean. The incident direction is ki = sin (h cos /i; + sin (h sin i'fl - cos BiZ. The incident field is given as

flk x )

NOTE FOR VB6 DEVELOPERS: Use the Return statement instead of using the method s name to return a value

(6.3.2)

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and incident magnetic field is given by (6.1.33). We use the same spectrum ETE(k x , k y ) as given by Eqs. (6.1.35)~(6.1.38). Let r' = xx' + fly' + zf(x', y') denote a source point and r = xx + fly + zf(x, y) denote a field point on the rough surface. Then the integral equations on the dielectric rough surface using the 6 scalar components are, from Section 2 and repeated below for

convenience,

o= -

The purpose of this particular Create method is to create an instance of the class As discussed earlier in this chapter, objects are often created from a class using the Factory pattern The Create method is then used, instead of the constructor, to create instances of the class A Create method used to create an instance of a class would look similar to this:

E(r')) x V'92

[J -iwh' E(r')E191dB'

regulation of blood sugar and the disease diabetes, based on DNA sequence data from a protein database.

+ (h' . E(r') :~ V'92)} dB']

(6.3.3)

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' Create a new instance prod = New Product() ' Populate the object If prodID = 1 Then prodProductID = 1 prodProductName = "Mithril Coat" prodInventoryDate = #4/1/2006# End If Return prod End Function

+f {(h' x H(T'))

V'91 +h'.H(r')V'9I}dB']

- ( ' )

(6.3.4)

H r iWj.L191 dB'

The rst line of this function declares an object variable The New keyword is then used to create a new instance of the Product class The object properties are then populated Notice that these are hard-coded in this case The property values will be assigned from data in a database in 8 For now, the values are hard-coded so that the Create method works at this point without needing the data access layer in place just yet The last line of the function returns the instantiated and populated Product object Although these steps demonstrate a Create method, you can create any type of method using these steps Alternatively, you can use the Class Designer, as described in the next chapter, to assist you in de ning the methods of your class Use methods to perform all of the processing required by your application To create good methods, ensure that each method has a single purpose and that the method is no longer than about one page If a method is long, break it into multiple methods This makes each method much easier to build and maintain

+ f {(h'

Visualization is important because a protein s function can often be es tablished or at least approximated from its structure. Using visualization tools, the ef cacy of a particular protein can be predicted, potentially obvi ating the need to run lengthy, costly experimental studies in picking target proteins for use as therapeutic drugs. Biotechnology and information technology are in a tight symbiotic re lationship, in that many of the advances in molecular biology have been made possible by the availability of affordable, powerful computers and software. Many companies in the information technology eld have been saved from extinction by sales to biotechnology companies. A major chal lenge for the bioinformatics community is developing hardware and soft ware that has a proven return on investment (ROI), especially since many of the hardware and software applications have hefty price tags.

E(r'))

V'91

+ V'91 h' . E(r')} dB']

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